MGYG000311710

Taxonomy

Mediterraneibacter Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter

Cluster representative

MGYG000316941

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316941 on MGnify
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Annotations

MGYG000311710’s cluster representative genome MGYG000316941 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316941 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311710 Copy API Endpoint

MGYG000311710’s cluster representative (MGYG000316941) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316941’s sequence. Because MGYG000311710 has been clustered with MGYG000316941 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311710.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316941

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025277	SAMEA112905229	Control
1.00	SAMEA10105036	SAMEA112905300	Probiotic
1.00	SAMEA14409936	SAMEA112904743	Control
1.00	SAMEA7025261	SAMEA112905342	Probiotic
1.00	SAMEA7025248	SAMEA112905319	Probiotic
1.00	SAMEA9449926	SAMEA112904943	Prebiotic
0.99	SAMEA9449907	SAMEA112905341	Prebiotic
0.99	SAMEA7025288	SAMEA112905217	Control
0.99	SAMEA7025249	SAMEA112904823	Prebiotic
0.99	SAMEA7571848	SAMEA112905284	Prebiotic