HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311350

Details for MGYG000311350, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdimonas faecis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Merdimonas > Merdimonas faecis
Cluster representative

MGYG000308317

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308317 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311350’s cluster representative genome MGYG000308317 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308317 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311350 Copy API Endpoint
Samples containing this genome

MGYG000311350’s cluster representative (MGYG000308317) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308317’s sequence. Because MGYG000311350 has been clustered with MGYG000308317 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311350.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308317

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Containment Sample accession Animal accession Treatment
0.30 SAMEA9449876 Control
0.30 SAMEA9449885 Control
0.30 SAMEA9449881 Control
0.29 SAMEA14099421 Control
0.29 SAMEA10105011 Prebiotic
0.29 SAMEA9449942 Control
0.29 SAMEA10104989 Prebiotic
0.29 SAMEA9449859 Probiotic
0.29 SAMEA9449840 Probiotic
0.29 SAMEA10104957 Control