HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310779

Details for MGYG000310779, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter norwichensis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter norwichensis
Cluster representative

MGYG000311477

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311477 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310779’s cluster representative genome MGYG000311477 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311477 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310779 Copy API Endpoint
Samples containing this genome

MGYG000310779’s cluster representative (MGYG000311477) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311477’s sequence. Because MGYG000310779 has been clustered with MGYG000311477 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310779.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311477

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Containment Sample accession Animal accession Treatment
0.25 SAMEA9449908 Prebiotic
0.25 SAMEA9449918 Probiotic
0.24 SAMEA9449939 Prebiotic
0.24 SAMEA7025278 Prebiotic
0.24 SAMEA7571764 Control
0.24 SAMEA7697602 Probiotic
0.24 SAMEA7571762 Control
0.24 SAMEA9449960 Control
0.24 SAMEA10159198 Prebiotic
0.23 SAMEA7025237 Probiotic