HoloFood Data Portal

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MGYG000310255

Details for MGYG000310255, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerostipes butyraticus Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Anaerostipes > Anaerostipes butyraticus
Cluster representative

MGYG000311975

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311975 on MGnify
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Annotations

MGYG000310255’s cluster representative genome MGYG000311975 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311975 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310255 Copy API Endpoint
Samples containing this genome

MGYG000310255’s cluster representative (MGYG000311975) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311975’s sequence. Because MGYG000310255 has been clustered with MGYG000311975 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310255.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311975

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025266 Probiotic
0.97 SAMEA7025263 Control
0.97 SAMEA10104996 Prebiotic
0.97 SAMEA7025267 Control
0.97 SAMEA10455476 Probiotic
0.96 SAMEA10104953 Prebiotic
0.96 SAMEA7025238 Probiotic
0.96 SAMEA7571814 Prebiotic
0.96 SAMEA9449902 Control
0.96 SAMEA7025255 Prebiotic