HoloFood Data Portal

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MGYG000309403

Details for MGYG000309403, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000312144

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312144 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309403’s cluster representative genome MGYG000312144 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312144 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309403 Copy API Endpoint
Samples containing this genome

MGYG000309403’s cluster representative (MGYG000312144) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312144’s sequence. Because MGYG000309403 has been clustered with MGYG000312144 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309403.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312144

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Containment Sample accession Animal accession Treatment
0.36 SAMEA7571797 Control
0.35 SAMEA10105052 Control
0.34 SAMEA14099422 Control
0.34 SAMEA10104951 Prebiotic
0.33 SAMEA7697583 Probiotic
0.33 SAMEA10105056 Prebiotic
0.30 SAMEA14095991 Control
0.29 SAMEA9449886 Control
0.26 SAMEA14095989 Prebiotic
0.24 SAMEA10455483 Prebiotic