HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309238

Details for MGYG000309238, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethousia gallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-138 > Pelethousia > Pelethousia gallinarum
Cluster representative

MGYG000307658

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307658 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309238’s cluster representative genome MGYG000307658 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307658 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309238 Copy API Endpoint
Samples containing this genome

MGYG000309238’s cluster representative (MGYG000307658) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307658’s sequence. Because MGYG000309238 has been clustered with MGYG000307658 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309238.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307658

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Containment Sample accession Animal accession Treatment
0.60 SAMEA10455497 Probiotic
0.53 SAMEA7025262 Control
0.52 SAMEA9449841 Probiotic
0.52 SAMEA9449873 Prebiotic
0.51 SAMEA10104978 Control
0.50 SAMEA9449910 Probiotic
0.49 SAMEA7697584 Control
0.46 SAMEA7697612 Control
0.45 SAMEA9449878 Control
0.43 SAMEA14409936 Control