MGYG000309180

Taxonomy

CAJFPI01 sp904419145 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > CAJFPI01 > CAJFPI01 sp904419145

Cluster representative

MGYG000319896

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319896 on MGnify
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Annotations

MGYG000309180’s cluster representative genome MGYG000319896 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319896 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309180 Copy API Endpoint

MGYG000309180’s cluster representative (MGYG000319896) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319896’s sequence. Because MGYG000309180 has been clustered with MGYG000319896 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309180.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319896

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Containment	Sample accession	Animal accession	Treatment
0.22	SAMEA9449922	SAMEA112904890	Control
0.21	SAMEA10105004	SAMEA112904927	Probiotic
0.21	SAMEA9449942	SAMEA112904956	Control
0.21	SAMEA10104990	SAMEA112905160	Prebiotic
0.21	SAMEA7571856	SAMEA112904762	Probiotic
0.21	SAMEA10130076	SAMEA112905262	Prebiotic
0.21	SAMEA7571835	SAMEA112905381	Prebiotic
0.21	SAMEA7571782	SAMEA112904984	Prebiotic
0.21	SAMEA10454437	SAMEA112905261	Probiotic
0.20	SAMEA9449859	SAMEA112905236	Probiotic