HoloFood Data Portal

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MGYG000309089

Details for MGYG000309089, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-508 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508
Cluster representative

MGYG000311797

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311797 on MGnify
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Annotations

MGYG000309089’s cluster representative genome MGYG000311797 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311797 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309089 Copy API Endpoint
Samples containing this genome

MGYG000309089’s cluster representative (MGYG000311797) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311797’s sequence. Because MGYG000309089 has been clustered with MGYG000311797 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309089.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311797

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025260 Prebiotic
0.99 SAMEA10104983 Control
0.94 SAMEA7722476 Control
0.93 SAMEA9449940 Prebiotic
0.92 SAMEA7571808 Control
0.92 SAMEA7025251 Control
0.91 SAMEA7025250 Control
0.91 SAMEA9449854 Prebiotic
0.91 SAMEA7697576 Prebiotic
0.90 SAMEA7025274 Probiotic