HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309028

Details for MGYG000309028, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Victivallis lenta Bacteria > Verrucomicrobiota > Lentisphaeria > Victivallales > Victivallaceae > Victivallis > Victivallis lenta
Cluster representative

MGYG000309657

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309657 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309028’s cluster representative genome MGYG000309657 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309657 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309028 Copy API Endpoint
Samples containing this genome

MGYG000309028’s cluster representative (MGYG000309657) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309657’s sequence. Because MGYG000309028 has been clustered with MGYG000309657 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309028.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309657

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025271 Probiotic
0.95 SAMEA10104961 Probiotic
0.94 SAMEA10454442 Probiotic
0.91 SAMEA7025274 Probiotic
0.90 SAMEA7571841 Probiotic
0.90 SAMEA7025281 Probiotic
0.88 SAMEA7025288 Control
0.86 SAMEA7571797 Control
0.82 SAMEA14099424 Prebiotic
0.82 SAMEA7697602 Probiotic