HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309024

Details for MGYG000309024, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterocloster excrementigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Enterocloster > Enterocloster excrementigallinarum
Cluster representative

MGYG000320603

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320603 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309024’s cluster representative genome MGYG000320603 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320603 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309024 Copy API Endpoint
Samples containing this genome

MGYG000309024’s cluster representative (MGYG000320603) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320603’s sequence. Because MGYG000309024 has been clustered with MGYG000320603 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309024.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320603

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Containment Sample accession Animal accession Treatment
0.98 SAMEA7025254 Prebiotic
0.98 SAMEA10104943 Probiotic
0.98 SAMEA10104997 Prebiotic
0.98 SAMEA7025234 Control
0.98 SAMEA9449894 Probiotic
0.98 SAMEA7025269 Probiotic
0.98 SAMEA7025267 Control
0.98 SAMEA7025266 Probiotic
0.98 SAMEA7697583 Probiotic
0.98 SAMEA9449833 Probiotic