HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308844

Details for MGYG000308844, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A intestinavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A > Blautia_A intestinavium
Cluster representative

MGYG000319845

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319845 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308844’s cluster representative genome MGYG000319845 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319845 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308844 Copy API Endpoint
Samples containing this genome

MGYG000308844’s cluster representative (MGYG000319845) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319845’s sequence. Because MGYG000308844 has been clustered with MGYG000319845 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308844.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319845

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10455474 Probiotic
0.99 SAMEA10158026 Control
0.96 SAMEA7571782 Prebiotic
0.95 SAMEA9449881 Control
0.94 SAMEA9449955 Probiotic
0.93 SAMEA7697633 Prebiotic
0.93 SAMEA7025240 Probiotic
0.90 SAMEA10104972 Probiotic
0.90 SAMEA9449907 Prebiotic
0.90 SAMEA7025266 Probiotic