MGYG000308628

Taxonomy

UBA4716 sp905215805 Bacteria > Firmicutes_A > Clostridia > UBA1381 > UBA1381 > UBA4716 > UBA4716 sp905215805

Cluster representative

MGYG000311158

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311158 on MGnify
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Annotations

MGYG000308628’s cluster representative genome MGYG000311158 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311158 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308628 Copy API Endpoint

MGYG000308628’s cluster representative (MGYG000311158) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311158’s sequence. Because MGYG000308628 has been clustered with MGYG000311158 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308628.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311158

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA9449932	SAMEA112905251	Prebiotic
0.21	SAMEA7571826	SAMEA112905123	Probiotic
0.21	SAMEA14099424	SAMEA112905085	Prebiotic
0.21	SAMEA10159249	SAMEA112905022	Probiotic
0.21	SAMEA7697637	SAMEA112905035	Prebiotic
0.21	SAMEA7025287	SAMEA112905268	Prebiotic
0.21	SAMEA10104914	SAMEA112904915	Control
0.20	SAMEA10104945	SAMEA112904801	Probiotic
0.20	SAMEA10105047	SAMEA112905233	Control