HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308624

Details for MGYG000308624, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecalibacterium intestinipullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faecalibacterium > Faecalibacterium intestinipullorum
Cluster representative

MGYG000318274

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318274 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308624’s cluster representative genome MGYG000318274 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318274 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308624 Copy API Endpoint
Samples containing this genome

MGYG000308624’s cluster representative (MGYG000318274) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318274’s sequence. Because MGYG000308624 has been clustered with MGYG000318274 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308624.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318274

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Containment Sample accession Animal accession Treatment
0.22 SAMEA14095991 Control
0.22 SAMEA7025245 Probiotic
0.21 SAMEA7025234 Control
0.21 SAMEA7697584 Control
0.21 SAMEA10104915 Control
0.21 SAMEA7571835 Prebiotic
0.21 SAMEA7571781 Control
0.21 SAMEA7571820 Probiotic
0.21 SAMEA7025251 Control
0.21 SAMEA9449928 Prebiotic