HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308609

Details for MGYG000308609, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia
Cluster representative

MGYG000311220

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311220 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308609’s cluster representative genome MGYG000311220 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311220 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308609 Copy API Endpoint
Samples containing this genome

MGYG000308609’s cluster representative (MGYG000311220) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311220’s sequence. Because MGYG000308609 has been clustered with MGYG000311220 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308609.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311220

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.89 SAMEA10105012 Control
0.86 SAMEA10104976 Control
0.85 SAMEA10104968 Prebiotic
0.82 SAMEA7025266 Probiotic
0.79 SAMEA14409936 Control
0.78 SAMEA10145585 Control
0.76 SAMEA7025234 Control
0.73 SAMEA9449944 Control
0.71 SAMEA7697589 Control
0.69 SAMEA7025260 Prebiotic