HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904771: a HoloFood chicken host

Data available for SAMEA112904771


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
View 2 derived samples
API endpoint
/api/animals/SAMEA112904771 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904771, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.22 g
Average Daily Feed intake: Day 00 - 35 84.33 g
Average Daily Feed intake: Day 07 - 21 70.89 g
Average Daily Feed intake: Day 21 - 35 132.84 g
Average Daily Gain: Day 00 - 07 18.84 g
Average Daily Gain: Day 00 - 35 55.32 g
Average Daily Gain: Day 07 - 21 49.32 g
Average Daily Gain: Day 21 - 35 79.58 g
Average European Performance Efficiency Factor: Day 00 - 07 171.13 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.462 None
Average Feed to Conversion Ratio: Day 07 - 21 1.438 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 38.64 g
Average body weight at day 07 170.51 g
Average body weight at day 21 860.94 g
Average body weight at day 35 1975 g
European Performance Efficiency Factor: Day 00 - 35 344.82 None
European Performance Efficiency Factor: Day 07 - 21 334.26 None
European Performance Efficiency Factor: Day 21 - 35 476.68 None
FCR (not corrected): Day 00 - 07 1.079 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.535 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.669 None
Feed to Conversion Ratio: Day 00 - 07 1.073 g/g
Feed to Conversion Ratio: Day 00 - 35 1.524 g/g
Feed to Conversion Ratio: Day 21 - 35 1.669 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=92.31 P1=7.69 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 7.36 pH
Litter at Day 21 5.75 pH
Litter at Day 35 6.19 pH
Mean Abdominal fat Yield 1.3 %
Mean Abdominal fat weight 28.12 g
Mean Breast Yield 19.65 %
Mean Breast weight 423.27 g
Mean CRP at Day 07 1.2539 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0934 pg/mg
Mean Carcass Weight 1632.7 g
Mean Carcass Yield 76.05 %
Mean HPT at Day 07 0.98021 ng/ml
Mean HPT at Day 21 0.84714 ng/ml
Mean HPT at Day 35 0.90874 ng/ml
Mean LPS at Day 07 6.9515 ng/L
Mean LPS at Day 21 4.4739 ng/L
Mean LPS at Day 35 4.6073 ng/L
Mean Legs Yield 19.85 %
Mean Legs weight 424.5 g
Mean TBARS 0.1167 mg MDA/kg
Mean carcass body weight 2146.7 g
Mean feather cortisol at Day 07 10.845 pg/mg
Mean feather cortisol at Day 21 6.95 pg/mg
Mean feather cortisol at Day 35 8.0833 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 2.56 %
Mortality: Day 21 - 35 0 %
Pen code CB10 None

Sample metadata

Marker Measurement Units
Animal code CB10.05 None
Breed Ross None
C-Reactive protein 1.01 pg/ml
Chicken body weight 164.5 g
Feather cortisol 10.46 pg/mg
Haptoglobin 7.9 ng/ml
Lipopolysaccharide 53.55 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None