MGYG000308563

Taxonomy

Gemmiger avicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger avicola

Cluster representative

MGYG000318523

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318523 on MGnify
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Annotations

MGYG000308563’s cluster representative genome MGYG000318523 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318523 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308563 Copy API Endpoint

MGYG000308563’s cluster representative (MGYG000318523) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318523’s sequence. Because MGYG000308563 has been clustered with MGYG000318523 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308563.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318523

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10455494	SAMEA112905043	Control
0.99	SAMEA10145601	SAMEA112905257	Control
0.99	SAMEA7025253	SAMEA112905350	Prebiotic
0.99	SAMEA9449928	SAMEA112904898	Prebiotic
0.99	SAMEA10145562	SAMEA112905169	Control
0.98	SAMEA10455495	SAMEA112904921	Control
0.98	SAMEA10105056	SAMEA112904738	Prebiotic
0.98	SAMEA7025262	SAMEA112905328	Control
0.96	SAMEA10145599	SAMEA112905287	Control
0.94	SAMEA7722478	SAMEA112905150	Control