MGYG000308544

Taxonomy

Lactobacillus johnsonii Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus johnsonii

Cluster representative

MGYG000317107

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317107 on MGnify
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Annotations

MGYG000308544’s cluster representative genome MGYG000317107 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317107 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308544 Copy API Endpoint

MGYG000308544’s cluster representative (MGYG000317107) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317107’s sequence. Because MGYG000308544 has been clustered with MGYG000317107 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308544.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317107

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10158026	SAMEA112905254	Control
1.00	SAMEA10145584	SAMEA112905186	Control
1.00	SAMEA7025266	SAMEA112905005	Probiotic
1.00	SAMEA10130027	SAMEA112905197	Control
1.00	SAMEA7368184	SAMEA112905304	Prebiotic
1.00	SAMEA10145580	SAMEA112905182	Control
1.00	SAMEA10159262	SAMEA112904822	Prebiotic
1.00	SAMEA10130035	SAMEA112905264	Prebiotic
1.00	SAMEA10130041	SAMEA112905286	Prebiotic
1.00	SAMEA10159265	SAMEA112904949	Probiotic