HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308530

Details for MGYG000308530, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthovicinus excrementipullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Onthovicinus > Onthovicinus excrementipullorum
Cluster representative

MGYG000315409

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315409 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308530’s cluster representative genome MGYG000315409 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315409 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308530 Copy API Endpoint
Samples containing this genome

MGYG000308530’s cluster representative (MGYG000315409) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315409’s sequence. Because MGYG000308530 has been clustered with MGYG000315409 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308530.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315409

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571838 Control
1.00 SAMEA7025264 Probiotic
1.00 SAMEA7697598 Control
1.00 SAMEA7025267 Control
1.00 SAMEA7571833 Prebiotic
1.00 SAMEA7697596 Prebiotic
1.00 SAMEA7025288 Control
1.00 SAMEA7571834 Prebiotic
1.00 SAMEA7025259 Prebiotic
1.00 SAMEA7697625 Probiotic