HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308526

Details for MGYG000308526, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus pullicaecorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus pullicaecorum
Cluster representative

MGYG000311674

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311674 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308526’s cluster representative genome MGYG000311674 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311674 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308526 Copy API Endpoint
Samples containing this genome

MGYG000308526’s cluster representative (MGYG000311674) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311674’s sequence. Because MGYG000308526 has been clustered with MGYG000311674 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308526.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311674

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025243 Prebiotic
0.97 SAMEA10159251 Control
0.97 SAMEA10104922 Prebiotic
0.94 SAMEA7697592 Control
0.91 SAMEA10104961 Probiotic
0.90 SAMEA14095989 Prebiotic
0.83 SAMEA10104964 Control
0.80 SAMEA9449904 Control
0.79 SAMEA10455491 Probiotic
0.79 SAMEA7025253 Prebiotic