HoloFood Data Portal

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MGYG000308444

Details for MGYG000308444, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA1390 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > UBA1390
Cluster representative

MGYG000312329

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312329 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308444’s cluster representative genome MGYG000312329 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312329 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308444 Copy API Endpoint
Samples containing this genome

MGYG000308444’s cluster representative (MGYG000312329) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312329’s sequence. Because MGYG000308444 has been clustered with MGYG000312329 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308444.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312329

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Containment Sample accession Animal accession Treatment
0.84 SAMEA9449862 Prebiotic
0.83 SAMEA7025250 Control
0.82 SAMEA7025246 Probiotic
0.80 SAMEA7697589 Control
0.77 SAMEA7025274 Probiotic
0.76 SAMEA7025254 Prebiotic
0.76 SAMEA7025261 Probiotic
0.75 SAMEA7025236 Probiotic
0.75 SAMEA10104992 Prebiotic
0.71 SAMEA7697592 Control