HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308426

Details for MGYG000308426, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerotruncus colihominis Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Anaerotruncus > Anaerotruncus colihominis
Cluster representative

MGYG000316441

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316441 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308426’s cluster representative genome MGYG000316441 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316441 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308426 Copy API Endpoint
Samples containing this genome

MGYG000308426’s cluster representative (MGYG000316441) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316441’s sequence. Because MGYG000308426 has been clustered with MGYG000316441 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308426.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316441

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Containment Sample accession Animal accession Treatment
0.92 SAMEA9449843 Probiotic
0.92 SAMEA7571785 Probiotic
0.92 SAMEA7571841 Probiotic
0.92 SAMEA9449854 Prebiotic
0.92 SAMEA7025279 Probiotic
0.92 SAMEA7025266 Probiotic
0.91 SAMEA10104983 Control
0.91 SAMEA7025260 Prebiotic
0.91 SAMEA7025267 Control
0.91 SAMEA10159244 Probiotic