HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308412

Details for MGYG000308412, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fusicatenibacter sp900543115 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fusicatenibacter > Fusicatenibacter sp900543115
Cluster representative

MGYG000320181

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320181 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308412’s cluster representative genome MGYG000320181 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320181 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308412 Copy API Endpoint
Samples containing this genome

MGYG000308412’s cluster representative (MGYG000320181) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320181’s sequence. Because MGYG000308412 has been clustered with MGYG000320181 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308412.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320181

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Containment Sample accession Animal accession Treatment
0.96 SAMEA7025260 Prebiotic
0.94 SAMEA14099421 Control
0.94 SAMEA7722478 Control
0.93 SAMEA14095991 Control
0.91 SAMEA7697592 Control
0.91 SAMEA7722476 Control
0.91 SAMEA7025254 Prebiotic
0.91 SAMEA10105012 Control
0.91 SAMEA7571795 Prebiotic
0.91 SAMEA7025245 Probiotic