MGYG000308399

Taxonomy

Ligilactobacillus salivarius Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus salivarius

Cluster representative

MGYG000309419

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309419 on MGnify
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Annotations

MGYG000308399’s cluster representative genome MGYG000309419 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309419 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308399 Copy API Endpoint

MGYG000308399’s cluster representative (MGYG000309419) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309419’s sequence. Because MGYG000308399 has been clustered with MGYG000309419 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308399.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309419

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025234	SAMEA112905098	Control
1.00	SAMEA7025250	SAMEA112905214	Control
1.00	SAMEA7025251	SAMEA112905290	Control
1.00	SAMEA10145598	SAMEA112905287	Control
1.00	SAMEA10158036	SAMEA112904843	Probiotic
0.99	SAMEA7025269	SAMEA112904942	Probiotic
0.99	SAMEA14095991	SAMEA112904755	Control
0.99	SAMEA7368187	SAMEA112904873	Control
0.99	SAMEA10130081	SAMEA112905099	Probiotic
0.99	SAMEA10145584	SAMEA112905186	Control