HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.


Details for MGYG000308384, a genome assembled from HoloFood chicken metagenomes

Genome details
Bifidobacterium pullorum_B Bacteria > Actinobacteriota > Actinomycetia > Actinomycetales > Bifidobacteriaceae > Bifidobacterium > Bifidobacterium pullorum_B
Cluster representative


Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316616 on MGnify
 Show other genomes in cluster

MGYG000308384’s cluster representative genome MGYG000316616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316616 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308384 Copy API Endpoint
Samples containing this genome

MGYG000308384’s cluster representative (MGYG000316616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316616’s sequence. Because MGYG000308384 has been clustered with MGYG000316616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308384.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316616

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA9449907 Prebiotic
1.00 SAMEA7025274 Probiotic
1.00 SAMEA7571847 Prebiotic
1.00 SAMEA7025260 Prebiotic
1.00 SAMEA7571870 Prebiotic
1.00 SAMEA7697576 Prebiotic
1.00 SAMEA7025277 Control
1.00 SAMEA7025259 Prebiotic
1.00 SAMEA7025250 Control
1.00 SAMEA10104957 Control