HoloFood Data Portal

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MGYG000320874

Details for MGYG000320874, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coprocola pullicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Coprocola > Coprocola pullicola
Cluster representative

MGYG000310311

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310311 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320874’s cluster representative genome MGYG000310311 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310311 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320874 Copy API Endpoint
Samples containing this genome

MGYG000320874’s cluster representative (MGYG000310311) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310311’s sequence. Because MGYG000320874 has been clustered with MGYG000310311 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320874.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310311

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10105012 Control
1.00 SAMEA7025264 Probiotic
1.00 SAMEA7697588 Probiotic
1.00 SAMEA7697598 Control
1.00 SAMEA7025251 Control
1.00 SAMEA7697578 Control
1.00 SAMEA10159266 Control
1.00 SAMEA10455474 Probiotic
1.00 SAMEA10104954 Control
1.00 SAMEA10104989 Prebiotic