HoloFood Data Portal

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MGYG000320854

Details for MGYG000320854, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Negativibacillus faecipullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Negativibacillus > Negativibacillus faecipullorum
Cluster representative

MGYG000308854

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308854 on MGnify
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Annotations

MGYG000320854’s cluster representative genome MGYG000308854 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308854 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320854 Copy API Endpoint
Samples containing this genome

MGYG000320854’s cluster representative (MGYG000308854) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308854’s sequence. Because MGYG000320854 has been clustered with MGYG000308854 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320854.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308854

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Containment Sample accession Animal accession Treatment
0.26 SAMEA7571873 Prebiotic
0.26 SAMEA10105020 Probiotic
0.25 SAMEA10105029 Probiotic
0.25 SAMEA10105071 Prebiotic
0.24 SAMEA10105046 Control
0.24 SAMEA7697611 Prebiotic
0.23 SAMEA7571856 Probiotic
0.21 SAMEA10130088 Prebiotic
0.21 SAMEA7697618 Prebiotic
0.21 SAMEA9449939 Prebiotic