HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905280: a HoloFood chicken host

Data available for SAMEA112905280


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905280 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905280, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.61 g
Average Daily Feed intake: Day 00 - 35 69.41 g
Average Daily Feed intake: Day 07 - 21 62.96 g
Average Daily Feed intake: Day 21 - 35 102.72 g
Average Daily Gain: Day 00 - 07 21.69 g
Average Daily Gain: Day 00 - 35 49.25 g
Average Daily Gain: Day 07 - 21 45.25 g
Average Daily Gain: Day 21 - 35 67.02 g
Average European Performance Efficiency Factor: Day 00 - 07 212.22 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.392 None
Average Feed to Conversion Ratio: Day 07 - 21 1.392 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.29 g
Average body weight at day 07 194.14 g
Average body weight at day 21 827.59 g
Average body weight at day 35 1765.9 g
European Performance Efficiency Factor: Day 00 - 35 322.51 None
European Performance Efficiency Factor: Day 07 - 21 325.15 None
European Performance Efficiency Factor: Day 21 - 35 407.16 None
FCR (not corrected): Day 00 - 07 1.005 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.467 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.672 None
Feed to Conversion Ratio: Day 00 - 07 0.996 g/g
Feed to Conversion Ratio: Day 00 - 35 1.41 g/g
Feed to Conversion Ratio: Day 21 - 35 1.533 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.69 pH
Litter at Day 21 8.32 pH
Litter at Day 35 8.65 pH
Mean Abdominal fat Yield 1.61 %
Mean Abdominal fat weight 31.62 g
Mean Breast Yield 17.43 %
Mean Breast weight 336.62 g
Mean CRP at Day 07 2.1745 pg/mg
Mean CRP at Day 21 1.4393 pg/mg
Mean CRP at Day 35 1.2248 pg/mg
Mean Carcass Weight 1475 g
Mean Carcass Yield 76.33 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.61884 ng/ml
Mean HPT at Day 35 0.8111 ng/ml
Mean LPS at Day 07 3.9939 ng/L
Mean LPS at Day 21 6.506 ng/L
Mean LPS at Day 35 2.9732 ng/L
Mean Legs Yield 20.57 %
Mean Legs weight 397.45 g
Mean TBARS 0.0367 mg MDA/kg
Mean carcass body weight 1933.3 g
Mean feather cortisol at Day 07 6.355 pg/mg
Mean feather cortisol at Day 21 8.52 pg/mg
Mean feather cortisol at Day 35 15.042 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5.13 %
Mortality without culleds: Day 21 - 35 6.9 %
Mortality: Day 00 - 07 2.56 %
Mortality: Day 00 - 35 7.69 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 6.9 %
Pen code CC04 None

Sample metadata

Marker Measurement Units
Animal code CC04.03 None
Breed Ross None
C-Reactive protein 4.97 pg/ml
Chicken body weight 155.2 g
Feather cortisol 6.7 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 13.76 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None