MGYG000320825

Taxonomy

Fimimonas gallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > Fimimonas > Fimimonas gallinarum

Cluster representative

MGYG000309765

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309765 on MGnify
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Annotations

MGYG000320825’s cluster representative genome MGYG000309765 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309765 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320825 Copy API Endpoint

MGYG000320825’s cluster representative (MGYG000309765) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309765’s sequence. Because MGYG000320825 has been clustered with MGYG000309765 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320825.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309765

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025269	SAMEA112904942	Probiotic
1.00	SAMEA7697579	SAMEA112904765	Control
1.00	SAMEA7025256	SAMEA112905271	Prebiotic
1.00	SAMEA10145585	SAMEA112905186	Control
0.99	SAMEA10159267	SAMEA112905062	Control
0.99	SAMEA7697584	SAMEA112904877	Control
0.99	SAMEA9449860	SAMEA112904977	Control
0.99	SAMEA9449873	SAMEA112904851	Prebiotic
0.99	SAMEA9449852	SAMEA112904941	Prebiotic
0.98	SAMEA7025236	SAMEA112905113	Probiotic