MGYG000320825

Taxonomy

Fimimonas gallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > Fimimonas > Fimimonas gallinarum

Cluster representative

MGYG000309765

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309765 on MGnify
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Annotations

MGYG000320825’s cluster representative genome MGYG000309765 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309765 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320825 Copy API Endpoint

MGYG000320825’s cluster representative (MGYG000309765) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309765’s sequence. Because MGYG000320825 has been clustered with MGYG000309765 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320825.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309765

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025248	SAMEA112905319	Probiotic
1.00	SAMEA9449866	SAMEA112904754	Probiotic
1.00	SAMEA10104974	SAMEA112904852	Probiotic
1.00	SAMEA10104918	SAMEA112904806	Probiotic
1.00	SAMEA9449862	SAMEA112905277	Prebiotic
1.00	SAMEA9449841	SAMEA112904936	Probiotic
1.00	SAMEA7571794	SAMEA112904960	Prebiotic
1.00	SAMEA9449868	SAMEA112904935	Control
1.00	SAMEA9449892	SAMEA112905181	Probiotic
1.00	SAMEA7697601	SAMEA112905311	Prebiotic