HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320805

Details for MGYG000320805, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccenecus avistercoris Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Caccenecus > Caccenecus avistercoris
Cluster representative

MGYG000320396

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320396 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320805’s cluster representative genome MGYG000320396 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320396 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320805 Copy API Endpoint
Samples containing this genome

MGYG000320805’s cluster representative (MGYG000320396) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320396’s sequence. Because MGYG000320805 has been clustered with MGYG000320396 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320805.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320396

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Containment Sample accession Animal accession Treatment
0.34 SAMEA7571817 Control
0.34 SAMEA7025261 Probiotic
0.34 SAMEA14095989 Prebiotic
0.34 SAMEA7025254 Prebiotic
0.33 SAMEA7697628 Control
0.33 SAMEA10105012 Control
0.32 SAMEA7571824 Probiotic
0.31 SAMEA7697625 Probiotic
0.30 SAMEA10104918 Probiotic
0.28 SAMEA7025268 Control