HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320722

Details for MGYG000320722, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerofilum excrementigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Anaerofilum > Anaerofilum excrementigallinarum
Cluster representative

MGYG000308090

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308090 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320722’s cluster representative genome MGYG000308090 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308090 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320722 Copy API Endpoint
Samples containing this genome

MGYG000320722’s cluster representative (MGYG000308090) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308090’s sequence. Because MGYG000320722 has been clustered with MGYG000308090 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320722.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308090

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Containment Sample accession Animal accession Treatment
0.87 SAMEA7722478 Control
0.87 SAMEA7025245 Probiotic
0.82 SAMEA7571794 Prebiotic
0.82 SAMEA7025251 Control
0.80 SAMEA10104916 Prebiotic
0.79 SAMEA7025250 Control
0.79 SAMEA10105021 Probiotic
0.79 SAMEA10455484 Prebiotic
0.78 SAMEA10104925 Control
0.78 SAMEA7697637 Prebiotic