HoloFood Data Portal

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MGYG000320673

Details for MGYG000320673, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecimorpha stercoravium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > UBA1390 > Faecimorpha > Faecimorpha stercoravium
Cluster representative

MGYG000317808

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317808 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320673’s cluster representative genome MGYG000317808 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317808 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320673 Copy API Endpoint
Samples containing this genome

MGYG000320673’s cluster representative (MGYG000317808) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317808’s sequence. Because MGYG000320673 has been clustered with MGYG000317808 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320673.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317808

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697588 Probiotic
0.95 SAMEA7025260 Prebiotic
0.92 SAMEA7722473 Prebiotic
0.92 SAMEA7571810 Prebiotic
0.90 SAMEA7025238 Probiotic
0.89 SAMEA7025250 Control
0.89 SAMEA9449907 Prebiotic
0.88 SAMEA7025276 Control
0.87 SAMEA7025261 Probiotic
0.86 SAMEA7571801 Probiotic