HoloFood Data Portal

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MGYG000320672

Details for MGYG000320672, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthoplasma faecipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Onthoplasma > Onthoplasma faecipullorum
Cluster representative

MGYG000307868

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307868 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320672’s cluster representative genome MGYG000307868 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307868 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320672 Copy API Endpoint
Samples containing this genome

MGYG000320672’s cluster representative (MGYG000307868) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307868’s sequence. Because MGYG000320672 has been clustered with MGYG000307868 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320672.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307868

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Containment Sample accession Animal accession Treatment
0.80 SAMEA7697581 Probiotic
0.70 SAMEA10145601 Control
0.61 SAMEA10455483 Prebiotic
0.56 SAMEA10104921 Prebiotic
0.54 SAMEA7697613 Prebiotic
0.52 SAMEA10145585 Control
0.52 SAMEA10104978 Control
0.51 SAMEA10455477 Probiotic
0.46 SAMEA10159263 Prebiotic
0.34 SAMEA10105022 Probiotic