HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320671

Details for MGYG000320671, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Metalachnospira gallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Metalachnospira > Metalachnospira gallinarum
Cluster representative

MGYG000308984

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308984 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320671’s cluster representative genome MGYG000308984 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308984 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320671 Copy API Endpoint
Samples containing this genome

MGYG000320671’s cluster representative (MGYG000308984) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308984’s sequence. Because MGYG000320671 has been clustered with MGYG000308984 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320671.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308984

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA7025274 Probiotic
0.90 SAMEA7025275 Probiotic
0.86 SAMEA7571849 Prebiotic
0.83 SAMEA7697613 Prebiotic
0.82 SAMEA10104915 Control
0.81 SAMEA9449849 Probiotic
0.80 SAMEA7697584 Control
0.78 SAMEA7722473 Prebiotic
0.78 SAMEA14095991 Control
0.78 SAMEA7571801 Probiotic