HoloFood Data Portal

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MGYG000320565

Details for MGYG000320565, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthousia Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Onthousia
Cluster representative

MGYG000315714

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315714 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320565’s cluster representative genome MGYG000315714 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315714 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320565 Copy API Endpoint
Samples containing this genome

MGYG000320565’s cluster representative (MGYG000315714) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315714’s sequence. Because MGYG000320565 has been clustered with MGYG000315714 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320565.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315714

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Containment Sample accession Animal accession Treatment
0.26 SAMEA10104997 Prebiotic
0.26 SAMEA7571775 Control
0.25 SAMEA10105016 Probiotic
0.25 SAMEA9449850 Control
0.25 SAMEA9449943 Control
0.25 SAMEA10104914 Control
0.25 SAMEA7697609 Probiotic
0.25 SAMEA10104962 Control
0.24 SAMEA14099422 Control
0.24 SAMEA7697599 Control