HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320420

Details for MGYG000320420, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coprosoma intestinipullorum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Coprosoma > Coprosoma intestinipullorum
Cluster representative

MGYG000313511

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313511 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320420’s cluster representative genome MGYG000313511 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313511 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320420 Copy API Endpoint
Samples containing this genome

MGYG000320420’s cluster representative (MGYG000313511) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313511’s sequence. Because MGYG000320420 has been clustered with MGYG000313511 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320420.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313511

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Containment Sample accession Animal accession Treatment
0.30 SAMEA7571825 Probiotic
0.30 SAMEA7571781 Control
0.29 SAMEA7571838 Control
0.29 SAMEA7697618 Prebiotic
0.29 SAMEA7368187 Control
0.28 SAMEA10104983 Control
0.28 SAMEA10104938 Prebiotic
0.28 SAMEA10455479 Prebiotic
0.26 SAMEA10130070 Control
0.26 SAMEA7025275 Probiotic