HoloFood Data Portal

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MGYG000320400

Details for MGYG000320400, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia sp904419945 Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia sp904419945
Cluster representative

MGYG000320088

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320088 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320400’s cluster representative genome MGYG000320088 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320088 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320400 Copy API Endpoint
Samples containing this genome

MGYG000320400’s cluster representative (MGYG000320088) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320088’s sequence. Because MGYG000320400 has been clustered with MGYG000320088 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320400.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320088

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Containment Sample accession Animal accession Treatment
0.88 SAMEA9449943 Control
0.88 SAMEA10104970 Probiotic
0.87 SAMEA9449895 Probiotic
0.87 SAMEA10454445 Probiotic
0.87 SAMEA9449846 Prebiotic
0.87 SAMEA10145562 Control
0.87 SAMEA7697602 Probiotic
0.86 SAMEA7025245 Probiotic
0.86 SAMEA7025234 Control
0.86 SAMEA10455483 Prebiotic