HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320366

Details for MGYG000320366, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterococcus_E cecorum Bacteria > Firmicutes > Bacilli > Lactobacillales > Enterococcaceae > Enterococcus_E > Enterococcus_E cecorum
Cluster representative

MGYG000320366

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320366 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320366’s cluster representative genome MGYG000320366 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320366 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320366 Copy API Endpoint
Samples containing this genome

MGYG000320366’s cluster representative (MGYG000320366) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320366’s sequence. Because MGYG000320366 has been clustered with MGYG000320366 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320366.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320366

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA14095991 Control
0.99 SAMEA10145584 Control
0.76 SAMEA10104963 Control
0.57 SAMEA10145583 Control
0.48 SAMEA10104964 Control
0.48 SAMEA7025269 Probiotic
0.47 SAMEA7368187 Control
0.43 SAMEA7025289 Control
0.42 SAMEA10130125 Prebiotic
0.42 SAMEA7571820 Probiotic