HoloFood Data Portal

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MGYG000320235

Details for MGYG000320235, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatomorpha merdavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Scatomorpha > Scatomorpha merdavium
Cluster representative

MGYG000307679

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307679 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320235’s cluster representative genome MGYG000307679 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307679 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320235 Copy API Endpoint
Samples containing this genome

MGYG000320235’s cluster representative (MGYG000307679) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307679’s sequence. Because MGYG000320235 has been clustered with MGYG000307679 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320235.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307679

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Containment Sample accession Animal accession Treatment
0.82 SAMEA14099422 Control
0.82 SAMEA7025269 Probiotic
0.80 SAMEA7697612 Control
0.79 SAMEA10454449 Prebiotic
0.78 SAMEA14099424 Prebiotic
0.78 SAMEA7697613 Prebiotic
0.77 SAMEA7571820 Probiotic
0.73 SAMEA14099425 Prebiotic
0.72 SAMEA7722479 Prebiotic
0.69 SAMEA9449943 Control