HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320140

Details for MGYG000320140, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethomonas sp017887695 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Pelethomonas > Pelethomonas sp017887695
Cluster representative

MGYG000309761

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309761 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320140’s cluster representative genome MGYG000309761 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309761 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320140 Copy API Endpoint
Samples containing this genome

MGYG000320140’s cluster representative (MGYG000309761) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309761’s sequence. Because MGYG000320140 has been clustered with MGYG000309761 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320140.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309761

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025235 Probiotic
0.99 SAMEA10104915 Control
0.97 SAMEA7571795 Prebiotic
0.97 SAMEA9449858 Probiotic
0.94 SAMEA7697583 Probiotic
0.90 SAMEA14095989 Prebiotic
0.89 SAMEA10455473 Probiotic
0.89 SAMEA7697581 Probiotic
0.88 SAMEA10159267 Control
0.88 SAMEA7571804 Prebiotic