HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000319875

Details for MGYG000319875, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecisoma sp900753645 Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Faecisoma > Faecisoma sp900753645
Cluster representative

MGYG000313552

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313552 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319875’s cluster representative genome MGYG000313552 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313552 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319875 Copy API Endpoint
Samples containing this genome

MGYG000319875’s cluster representative (MGYG000313552) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313552’s sequence. Because MGYG000319875 has been clustered with MGYG000313552 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319875.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313552

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.55 SAMEA9449866 Probiotic
0.55 SAMEA10105011 Prebiotic
0.52 SAMEA7025246 Probiotic
0.51 SAMEA7697584 Control
0.51 SAMEA9449913 Probiotic
0.51 SAMEA10159244 Probiotic
0.50 SAMEA10104929 Prebiotic
0.50 SAMEA10104964 Control
0.46 SAMEA9449854 Prebiotic
0.46 SAMEA7025249 Prebiotic