MGYG000319203

Taxonomy

Gallimonas merdigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas merdigallinarum

Cluster representative

MGYG000316096

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316096 on MGnify
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Annotations

MGYG000319203’s cluster representative genome MGYG000316096 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316096 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319203 Copy API Endpoint

MGYG000319203’s cluster representative (MGYG000316096) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316096’s sequence. Because MGYG000319203 has been clustered with MGYG000316096 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319203.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316096

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571834	SAMEA112905162	Prebiotic
1.00	SAMEA7571833	SAMEA112905047	Prebiotic
1.00	SAMEA10104941	SAMEA112904809	Probiotic
1.00	SAMEA7571835	SAMEA112905381	Prebiotic
0.99	SAMEA7697576	SAMEA112904922	Prebiotic
0.98	SAMEA10104944	SAMEA112905178	Probiotic
0.98	SAMEA10104940	SAMEA112905072	Probiotic
0.95	SAMEA7697581	SAMEA112905343	Probiotic
0.94	SAMEA10104968	SAMEA112905092	Prebiotic
0.94	SAMEA7571791	SAMEA112904934	Control