HoloFood Data Portal

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MGYG000318811

Details for MGYG000318811, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter caccogallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter caccogallinarum
Cluster representative

MGYG000309508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309508 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318811’s cluster representative genome MGYG000309508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309508 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318811 Copy API Endpoint
Samples containing this genome

MGYG000318811’s cluster representative (MGYG000309508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309508’s sequence. Because MGYG000318811 has been clustered with MGYG000309508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318811.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309508

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Containment Sample accession Animal accession Treatment
0.75 SAMEA10105012 Control
0.75 SAMEA7025264 Probiotic
0.75 SAMEA10104932 Control
0.75 SAMEA10105042 Probiotic
0.75 SAMEA10159251 Control
0.75 SAMEA10455473 Probiotic
0.75 SAMEA10105040 Control
0.75 SAMEA9449847 Probiotic
0.75 SAMEA9449921 Control
0.75 SAMEA7571826 Probiotic