HoloFood Data Portal

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MGYG000317645

Details for MGYG000317645, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallacutalibacter pullicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Gallacutalibacter > Gallacutalibacter pullicola
Cluster representative

MGYG000317645

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317645 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317645’s cluster representative genome MGYG000317645 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317645 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317645 Copy API Endpoint
Samples containing this genome

MGYG000317645’s cluster representative (MGYG000317645) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317645’s sequence. Because MGYG000317645 has been clustered with MGYG000317645 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317645.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317645

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Containment Sample accession Animal accession Treatment
0.27 SAMEA10159263 Prebiotic
0.27 SAMEA10105019 Control
0.26 SAMEA10104930 Control
0.26 SAMEA10159255 Probiotic
0.26 SAMEA10145556 Control
0.26 SAMEA7025285 Control
0.26 SAMEA7571846 Prebiotic
0.26 SAMEA9449885 Control
0.26 SAMEA10104964 Control
0.26 SAMEA10105030 Prebiotic