HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904948: a HoloFood chicken host

Data available for SAMEA112904948


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904948 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904948, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.39 g
Average Daily Feed intake: Day 00 - 35 87.98 g
Average Daily Feed intake: Day 07 - 21 72.46 g
Average Daily Feed intake: Day 21 - 35 141.06 g
Average Daily Gain: Day 00 - 07 18.19 g
Average Daily Gain: Day 00 - 35 57.39 g
Average Daily Gain: Day 07 - 21 50.88 g
Average Daily Gain: Day 21 - 35 83.49 g
Average European Performance Efficiency Factor: Day 00 - 07 170.58 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.443 None
Average Feed to Conversion Ratio: Day 07 - 21 1.424 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.18 g
Average body weight at day 07 172.5 g
Average body weight at day 21 884.85 g
Average body weight at day 35 2053.7 g
European Performance Efficiency Factor: Day 00 - 35 364.96 None
European Performance Efficiency Factor: Day 07 - 21 348.36 None
European Performance Efficiency Factor: Day 21 - 35 494.15 None
FCR (not corrected): Day 00 - 07 1.066 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.541 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.69 None
Feed to Conversion Ratio: Day 00 - 07 1.066 g/g
Feed to Conversion Ratio: Day 00 - 35 1.533 g/g
Feed to Conversion Ratio: Day 21 - 35 1.69 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=96.97 P1=3.03 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=81.48 P1=11.11 P2=7.41 P3=0.00 P4=0.00 %
Litter at Day 07 5.78 pH
Litter at Day 21 8.43 pH
Litter at Day 35 8.15 pH
Mean Abdominal fat Yield 1.44 %
Mean Abdominal fat weight 34.18 g
Mean Breast Yield 20.25 %
Mean Breast weight 480.65 g
Mean CRP at Day 07 2.0021 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.1083 pg/mg
Mean Carcass Weight 1805.1 g
Mean Carcass Yield 76.56 %
Mean HPT at Day 07 1.4562 ng/ml
Mean HPT at Day 21 0.85795 ng/ml
Mean HPT at Day 35 0.79456 ng/ml
Mean LPS at Day 07 7.0019 ng/L
Mean LPS at Day 21 4.5647 ng/L
Mean LPS at Day 35 4.6308 ng/L
Mean Legs Yield 19.4 %
Mean Legs weight 456.1 g
Mean TBARS 0.06 mg MDA/kg
Mean carcass body weight 2355 g
Mean feather cortisol at Day 07 11.148 pg/mg
Mean feather cortisol at Day 21 12.97 pg/mg
Mean feather cortisol at Day 35 18.533 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 2.5 %
Mortality: Day 21 - 35 0 %
Pen code CB11 None

Sample metadata

Marker Measurement Units
Animal code CB11.04 None
Breed Cobb None
C-Reactive protein 2.26 pg/ml
Chicken body weight 243.7 g
Feather cortisol 7.43 pg/mg
Haptoglobin 171.56 ng/ml
Lipopolysaccharide 52.91 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None