HoloFood Data Portal

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MGYG000317526

Details for MGYG000317526, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAJFPI01 sp904419145 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > CAJFPI01 > CAJFPI01 sp904419145
Cluster representative

MGYG000319896

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319896 on MGnify
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Annotations

MGYG000317526’s cluster representative genome MGYG000319896 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319896 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317526 Copy API Endpoint
Samples containing this genome

MGYG000317526’s cluster representative (MGYG000319896) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319896’s sequence. Because MGYG000317526 has been clustered with MGYG000319896 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317526.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319896

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Containment Sample accession Animal accession Treatment
0.29 SAMEA7697577 Prebiotic
0.29 SAMEA9449867 Control
0.29 SAMEA10105061 Control
0.29 SAMEA10104971 Probiotic
0.28 SAMEA10105025 Prebiotic
0.28 SAMEA9449844 Control
0.28 SAMEA7025253 Prebiotic
0.28 SAMEA10104967 Prebiotic
0.28 SAMEA10104926 Prebiotic
0.27 SAMEA10105011 Prebiotic