HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000316423

Details for MGYG000316423, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter stercoravium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter stercoravium
Cluster representative

MGYG000316423

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316423 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316423’s cluster representative genome MGYG000316423 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316423 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316423 Copy API Endpoint
Samples containing this genome

MGYG000316423’s cluster representative (MGYG000316423) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316423’s sequence. Because MGYG000316423 has been clustered with MGYG000316423 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316423.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316423

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571841 Probiotic
1.00 SAMEA10158026 Control
1.00 SAMEA10454437 Probiotic
0.96 SAMEA7571785 Probiotic
0.94 SAMEA7697596 Prebiotic
0.94 SAMEA10104944 Probiotic
0.94 SAMEA7025269 Probiotic
0.93 SAMEA7025255 Prebiotic
0.93 SAMEA14409936 Control
0.93 SAMEA10104915 Control