HoloFood Data Portal

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MGYG000315914

Details for MGYG000315914, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Flavonifractor avicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Flavonifractor > Flavonifractor avicola
Cluster representative

MGYG000316219

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316219 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315914’s cluster representative genome MGYG000316219 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316219 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315914 Copy API Endpoint
Samples containing this genome

MGYG000315914’s cluster representative (MGYG000316219) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316219’s sequence. Because MGYG000315914 has been clustered with MGYG000316219 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315914.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316219

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Containment Sample accession Animal accession Treatment
0.35 SAMEA10104971 Probiotic
0.35 SAMEA10105015 Probiotic
0.35 SAMEA10104953 Prebiotic
0.35 SAMEA9449937 Probiotic
0.35 SAMEA7571822 Probiotic
0.34 SAMEA7571790 Prebiotic
0.34 SAMEA10159249 Probiotic
0.34 SAMEA10104970 Probiotic
0.34 SAMEA10105036 Probiotic
0.34 SAMEA7025285 Control