HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000315544

Details for MGYG000315544, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallacutalibacter pullicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Gallacutalibacter > Gallacutalibacter pullicola
Cluster representative

MGYG000317645

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317645 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315544’s cluster representative genome MGYG000317645 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317645 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315544 Copy API Endpoint
Samples containing this genome

MGYG000315544’s cluster representative (MGYG000317645) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317645’s sequence. Because MGYG000315544 has been clustered with MGYG000317645 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315544.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317645

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Containment Sample accession Animal accession Treatment
0.89 SAMEA7025237 Probiotic
0.89 SAMEA7571810 Prebiotic
0.88 SAMEA9449854 Prebiotic
0.88 SAMEA10105037 Probiotic
0.88 SAMEA7025248 Probiotic
0.87 SAMEA7025281 Probiotic
0.87 SAMEA10104991 Prebiotic
0.87 SAMEA9449833 Probiotic
0.86 SAMEA7571802 Control
0.86 SAMEA7025261 Probiotic