HoloFood Data Portal

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MGYG000315208

Details for MGYG000315208, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gemmiger stercoravium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger stercoravium
Cluster representative

MGYG000307890

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307890 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315208’s cluster representative genome MGYG000307890 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307890 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315208 Copy API Endpoint
Samples containing this genome

MGYG000315208’s cluster representative (MGYG000307890) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307890’s sequence. Because MGYG000315208 has been clustered with MGYG000307890 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315208.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307890

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Containment Sample accession Animal accession Treatment
0.78 SAMEA9449866 Probiotic
0.78 SAMEA7025283 Control
0.77 SAMEA7571845 Control
0.77 SAMEA9449846 Prebiotic
0.77 SAMEA10105012 Control
0.77 SAMEA7722479 Prebiotic
0.76 SAMEA7025276 Control
0.76 SAMEA10104957 Control
0.75 SAMEA10455473 Probiotic
0.75 SAMEA7571827 Probiotic